I have found that after the attack to DNS servers in the US, gitrefresh operation seems to be blocked. Got the error:
error: The requested URL returned error: 403 Forbidden while accessing https://github.com/Novarizark/project/info/refs
fatal: HTTP request failed
Then found this in stackoverflow
http://stackoverflow.com/questions/7438313/pushing-to-git-returning-error-code-403-fatal-http-request-failed
change the https method to ssh method really solved the probleme. Although, I am still confused why this problem happens…
SAVIO is Berkeley’s high performance clusters.
http://research-it.berkeley.edu/services/high-performance-computing/user-guide
2.set up existing module
#——— Load specific modules ————– module load intel/2013_sp1.4.211 module load openmpi/1.6.5-intel
#module load netcdf/4.3.2-intel-p System admin only provide C++ lib
module load nco/4.4.6-intel-p module load ncview/2.1.2
$nf-config –all
$nc-config –all
can be used to check the installation status.
copy and paste to create
mkmf.template.savio.without_mpi in ./bin/
change:
FC CC MPI and NetCDF pathes.
in ./full_dynamics, change:
compile_full_dynamics_on_savio.csh to fit savio (usually, just change platform name is okay).
when compile, error:
google it:
https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/281453
The MKL libraries are in different directories than the compiler runtime and other libraries. By default, the compiler will not search for libraries in the MKL lib directory. Use the -mkl compiler option for simple jobs, and use the MKL Link Line Advisor for more intricate jobs.
When I tried -mkl it doesn’t work and appeared another error.
Fortunately, when I tried to module load ant TAB it, a module called
mkl/2013_sp1.4.211
just came into my eye.
of course, use it! The problem really solved.
So what is mkl?