YQ need to compile CMAQ-WRF 2-way, now we archive the process.
Final Configurations
Libs
- NVIDIA/hpc_sdk.2021.2
- hdf5-1.12.2
- netCDF-C v4.8.1
- netCDF-F v4.5.3
HDF5
CPP=cpp CFLAGS="-fPIC -m64 -tp=px" CXXFLAGS="-fPIC -m64 -tp=px" FCFLAGS="-fPIC -m64 -tp=px" CC=pgcc CXX=pgc++ FC=pgfortran ./configure --with-zlib=/home/yhuangci/soft/zlib-1.2.11-gcc --prefix=/home/yhuangci/soft/hdf5-1.12.1-pgi21 --enable-hl --enable-threadsafe --enable-cxx --enable-fortran --enable-unsupported
make
make install
NetCDF-C
CPPFLAGS='-I/home/yhuangci/soft/hdf5-1.12.1-pgi21/include -I/home/yhuangci/soft/zlib-1.2.11-gcc/include' LDFLAGS='-L/home/yhuangci/soft/hdf5-1.12.1-pgi21/lib -L/home/yhuangci/soft/zlib-1.2.11-gcc/lib' ./configure --prefix=/home/yhuangci/soft/netcdf-481c453f-pgi21 --disable-dap CC=pgcc
make
make install
NetCDF-F
CPPFLAGS='-I/home/yhuangci/soft/hdf5-1.12.1-pgi21/include -I/home/yhuangci/soft/zlib-1.2.11-gcc/include -I/home/yhuangci/soft/netcdf-481c453f-pgi21/include' LDFLAGS='-L/home/yhuangci/hdf5-1.12.1-pgi21/lib -L/home/yhuangci/soft/zlib-1.2.11-gcc/lib -L/home/yhuangci/soft/netcdf-481c453f-pgi21/lib' ./configure --prefix=/home/yhuangci/soft/netcdf-481c453f-pgi21 --disable-dap FC=pgfortran
make
make install
Whole Porting Process
Libs
- NVIDIA/hpc_sdk.2021.2
- mpich-3.4.2
- hdf5-1.12.2
- netCDF-C v4.8.1
- netCDF-F v4.5.3
MPICH
./configure --prefix=/home/yhuangci/soft/mpich342-pgi21 FC=pgfortran F77=pgfortran CC=pgcc CXX=pgc++ rsh=ssh
with error:
configure: error: no ch4 netmod selected
The default ch4 device could not detect a preferred network
library. Supported options are ofi (libfabric) and ucx:
--with-device=ch4:ofi or --with-device=ch4:ucx
Configure will use an embedded copy of libfabric or ucx if one is
not found in the user environment. An installation can be specified
by adding
--with-libfabric=<path/to/install> or --with-ucx=<path/to/install>
to the configuration.
The previous MPICH default device (ch3) is also available and
supported with option:
--with-device=ch3
Try:
./configure --prefix=/home/yhuangci/soft/mpich342-pgi21 FC=pgfortran F77=pgfortran CC=pgcc CXX=pgc++ rsh=ssh --with-device=ch4:ofi
Pass!
make 2>&1 | tee make.log # about 1 hour
Got error:
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:338: undefined reference to `fi_dupinfo'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:313: undefined reference to `fi_getinfo'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:321: undefined reference to `fi_getparams'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:323: undefined reference to `fi_tostr'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:327: undefined reference to `fi_tostr'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:327: undefined reference to `fi_tostr'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:321: undefined reference to `fi_freeparams'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:329: undefined reference to `fi_freeinfo'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:431: undefined reference to `fi_freeinfo'
/home/yhuangci/soft/mpich-3.4.2/modules/libfabric/util/info.c:353: undefined reference to `fi_tostr'
make[3]: *** [util/fi_info] Error 2
make[3]: Leaving directory `/home/yhuangci/soft/mpich-3.4.2/modules/libfabric'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/yhuangci/soft/mpich-3.4.2/modules/libfabric'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/yhuangci/soft/mpich-3.4.2'
make: *** [all] Error 2
Retry config:
./configure --prefix=/home/yhuangci/soft/mpich342-pgi21 FC=pgfortran F77=pgfortran CC=pgcc CXX=pgc++ rsh=ssh --with-device=ch3
make 2>&1 | tee make.log
Pass! make with on error but make check with 4 items not passed. Let’s leave it alone first.
HDF5
CPP=cpp CFLAGS="-fPIC -m64 -tp=px" CXXFLAGS="-fPIC -m64 -tp=px" FCFLAGS="-fPIC -m64 -tp=px" CC=pgcc CXX=pgc++ FC=pgfortran ./configure --with-zlib=/home/yhuangci/soft/zlib-1.2.11-gcc --prefix=/home/yhuangci/soft/hdf5-1.12.1-pgi21 --enable-hl --enable-threadsafe --enable-cxx --enable-fortran --enable-unsupported
make
make install
NetCDF-C
CPPFLAGS='-I/home/yhuangci/soft/hdf5-1.12.1-pgi21/include -I/home/yhuangci/soft/zlib-1.2.11-gcc/include' LDFLAGS='-L/home/yhuangci/soft/hdf5-1.12.1-pgi21/lib -L/home/yhuangci/soft/zlib-1.2.11-gcc/lib' ./configure --prefix=/home/yhuangci/soft/netcdf-481c453f-pgi21 --disable-dap CC=pgcc
make
make install
NetCDF-F
CPPFLAGS='-I/home/yhuangci/soft/hdf5-1.12.1-pgi21/include -I/home/yhuangci/soft/zlib-1.2.11-gcc/include -I/home/yhuangci/soft/netcdf-481c453f-pgi21/include' LDFLAGS='-L/home/yhuangci/hdf5-1.12.1-pgi21/lib -L/home/yhuangci/soft/zlib-1.2.11-gcc/lib -L/home/yhuangci/soft/netcdf-481c453f-pgi21/lib' ./configure --prefix=/home/yhuangci/soft/netcdf-481c453f-pgi21 --disable-dap FC=pgfortran
make
make install